BacterialGenomesConcatenated.ConstraintTree

This NEXUS formatted file provides two items. It provides the masked alignment of 264 loci for the 1095 taxa used to construct the constraint tree used later for the phylotyping analysis. It also provides the single maximum likelihood estimate of the bacterial phylogenetic relationships, as estimated by RAxML-Light (http://bioinformatics.oxfordjournals.org/content/early/2012/05/24/bioinformatics.bts309.abstract). This NEXUS file can be read by the program Mesquite (http://mesquiteproject.org/mesquite/mesquite.html).