Black grouse autosome consensus sequence
2016-11-02T12:48:32Z (GMT) by
Black grouse autosome consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (28) and maximum read depth (-D) set to twice the mean genome coverage (171)). All non-autosomal sites were discarded.