Coalescence recovers Rhodelphis as sister to red algae based on individual gene trees
datasetposted on 19.07.2019, 03:31 by Ryan M.R. Gawryluk, Denis V. Tikhonenkov, Elisabeth Hehenberger, Filip Husnik, Alexander P. Mylnikov, Patrick J. Keeling
Individual bootstrapped gene trees were generated with RAxML v8.1.6 and used to generate a species tree with ASTRAL-III under default parameters and 100 bootstrap replicates. Species trees were made from either all 253 single-gene trees from the 151/253 dataset, or b, the 50 trees with the highest relative tree certainty. The sister relationship of Rhodelphis and red algae is recovered with both datasets, and is in agreement with concatenated phylogenomic analyses. The resulting coalescent trees for each dataset, along with the gene trees used to generate the species tree, are included.