DIRECTORY: ./example_scripts These are generalized example scripts that should help you to recreate theses analyses using your own data. They are just guides, and will not run without some (limited) modification. There are four files. 1) ./example_scripts/final_parameters.txt QIIME parameters file 2) ./example_scripts/qiime_script_example.sh bash shell script for Qiime 1.4.0 analysis pipeline 3) ./example_scripts/bdiv_summary_example.sh bash shell script for summarizing jacknifed beta diversity results using the QIIME tree_compare.py script. 4) ./example_scripts/bdiv_rugs.py simple python script for creating SVG images to visualize the results from the beta diversity sensitivity analysis performed in (3) above.