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Genome-wide VCF including invariant sites
datasetposted on 25.11.2019 by Sean Stankowski, Madeline A. Chase, Allison M. Fuiten, Murillo F. Rodrigues, Peter L. Ralph, Matthew A. Streisfeld
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
This VCF file includes genotype calls for all 37 individuals included in the study at both variant and invariant sites. This file was generated using GATK v3.8 UnifiedGenotyper by including the EMIT_ALL_SITES option, and was used to more accurately estimate dxy and nucleotide diversity in genomic windows.