SNP loci of Dascyllus trimaculatus from the Western Indian Ocean
datasetposted on 07.05.2019 by Eva M Salas
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
The dataset contains 1,174 loci generated with ddRAD Sequencing, from single end reads, cleaned and trimmed to 95 bp. The format is for STRUCTURE. It contains 93 individuals from 7 populations. These loci were obtained with a STACKS denovo map using these filters: Loci shared in at least 65% of individuals within a group (r=0.65), shared between all populations (p=7), Coverage 8x (m=8), minor allele frequency 1.5% (maf=0.015) (i.e., at least two individuals must have the unique allele) Populations 1:NRS: Northern Red Sea 2:DJI: Djibouti 3:OMA: Oman 4:DGA: Diego de García, Chagos 5:ZAN: Zanzibar 6:MAY: Mayotte 7:JDN: Juan de Nova, Scattered Islands