Stacks and Genepop files
datasetposted on 25.11.2019 by Vince P. Buonaccorsi, Jacob Malloy, Mark Peterson, Kristen Brubaker, Chris J. Grant
Datasets usually provide raw data for analysis. This raw data often comes in spreadsheet form, but can be any collection of data, on which analysis can be performed.
Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool.