Stacks and Genepop files
datasetposted on 25.11.2019, 07:21 by Vince P. Buonaccorsi, Jacob Malloy, Mark Peterson, Kristen Brubaker, Chris J. Grant
Stacks v 1.36 catalog files and alleles.tsv, matches.tsv, snps.tsv, and tags.tsv files for each individual mapped to Atlantic salmon reference genome. Also included are sumstats.tsv file "batch_1.sumstats.tsv" for individuals grouped into either Susquehanna or Allegheny river basins, and the final filtered GENEPOP file, "batch_1_genepop_HWE001_poolBias.txt" used for analysis after filtering for Hardy Weinberg deviations and for loci that were associated with library pool.