Summary phylogenetic tree avian influenza HA segment
datasetposted on 27.03.2018, 08:16 by Daniel Grear, Jeffrey S. Hall, Robert J. Dusek, Hon S. Ip
Summary time-rooted Maximum clade credibility phylogenetic tree of the hemagglutinin segment of highly pathogenic avian influenza viruses isolated from wild birds and poultry during the 2014-2015 outbreak in North America. Nodes dates are the mean posterior estimate and are annotated with phylodynamic estimates of uncertainty if posterior probability was > 0.5. NEXUS file
Read the peer-reviewed publication
Grear DA, Hall JS, Dusek RJ, Ip HS (2017) Inferring epidemiologic dynamics from viral evolution: 2014-2015 Eurasian/North American highly pathogenic avian influenza viruses exceed transmission threshold, R 0 = 1, in wild birds and poultry in North America. Evolutionary Applications, online in advance of print.