Suppl%20dataset%201%20RNAseq.xlsx (28.81 MB)

Suppl dataset 1 RNAseq

Download (28.81 MB)
dataset
posted on 12.11.2019 by Renu Srivastava, Zhaoxia Li, Giulia Russo, Jie Tang, Ran Bi, Usha Muppirala, Sivanandan Chudalayandi, Andrew Severin, Mingze He, Samuel Vaitkevicius, Carolyn Lawrence-Dill, Peng Liu, Ann Stapleton, Diane Bassham, Federica Brandizzi, Stephen Howell
The ER stress transcriptome was profiled in maize B73 seedlings treated with 5 g ml-1 TM for 0, 3, 6, 12, 24, 36, and 48 h. (A 48-h mock-treated sample was included.) RNA was extracted from root samples and cDNA libraries were generated and subjected to DNA sequencing. Read sequences from three biological replicates (each with two technical replicates) were aligned to the maize genome v4. Read counts were normalized and differential gene expression was assessed using generalized linear models. Tab 1: Cluster analysis. Tab 2: RPKM values during time course following TM treatment. Tab 3: Mean and standard error of RPKM values.

History

dc.type.embargo

none

dc.format.extent

30214410

dc.identifier.uri

http://hdl.handle.net/10255/dryad.180184

dc.coverage.spatial

Temperate and subtropical zones

dc.coverage.temporal

Holocene

dwc.ScientificName

Zea Mays

Licence

Exports