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F60_10Reps.teinsertions (2.71 MB)

TE insertions and frequencies at F60

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posted on 30.07.2019, 17:45 by Neda Barghi, Raymond Tobler, Viola Nolte, Ana Marija Jakšić, François Mallard, Kathrin Anna Otte, Marlies Dolezal, Thomas Taus, Robert Kofler, Christian Schlötterer
This file contains the frequency of TE insertions in 10 hot-evolved replicates at generation 60. Format specification of this file can be found in manual of PopoolationTE2 (Kofler R, Gomez-Sanchez D, Schlötterer C. PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq. Mol Biol Evol. 2016;33(10):2759–64.). Column 1: 1-10 since it’s a joint analysis of 10 replicates, column 2: chromosome, column3 : position, column 4: strand of the TE insertion; plus (sense), minus (antisense) or point (unknown), column 5: TE family, column 6: order, column 7: support for the TE insertions; either a single forward signature (F) or a single reverse signature (R) or a matching pair of forward and reverse signatures (FR), column 8: comment (empty or "-" in newer versions), column 9-18: the population frequency of the TE in replicate 1 to 10 respectively.






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Drosophila simulans