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online resourceposted on 17.12.2019 by Handong Su, Yalin Liu, Chang Liu, Qinghua Shi, Yuhong Huang, Fangpu Han
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All the individual CentT566 repeats were extracted based on BLAST output for each subgenome in wheat. The cd-hit-est software was used to cluster similar CentT566 sequences into clusters using parameters “-c 0.90 -n 10” within each subgenome. The clusters with length larger than 500 bp were used for further analysis. Multiple sequence alignment and phylogenetic analysis of all CentT566 clusters were performed with ClustalW and MEGA7 software using the neighbor-joining method.