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ddRADseq SNP dataset used for genetic analyses
online resourceposted on 18.06.2019 by Stéphanie Sherpa, Michael G. B. Blum, Laurence Després
Any type of resource available online.
The dataset comprises 36,512 SPNs (imputed genotypes). The SFS for each population was estimated from the 36,512 SNPs after removing monomorphic loci. Removing minor allele count results in 10,483 SNPs (detection of selection). The position (CHROM), loci (LOCI ID), position (POS), reference allele (REF) and alternative allele (ALT) are given for each SNP. The genotypes are encoded as 0: homozygote REF; 1: heterozygote; 2: homozygote ALT. This dataset was obtained from double digest restriction associated DNA sequencing (ddRADseq). Genomic data have been published in Sherpa et al. 2019, Molecular Ecology, DOI: 10.1111/mec.15071. The raw sequences analyzed in the study are available in the European Nucleotide Archive repository (http://www.ebi.ac.uk/ena), and accessible under study accession number PRJEB31109.